3CFU Lipoprotein date Mar 04, 2008
title Crystal Structure Of The Yjha Protein From Bacillus Subtilis Northeast Structural Genomics Consortium Target Sr562
authors S.M.Vorobiev, Y.Chen, A.P.Kuzin, J.Seetharaman, F.Forouhar, L.Zha M.Maglaqui, R.Xiao, J.Liu, G.Swapna, J.Y.Huang, T.B.Acton, G.T.Mo J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (N
compound source
Molecule: Uncharacterized Lipoprotein Yjha
Chain: A, B
Fragment: Residues 64-213
Engineered: Yes
 Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Strain: 168
Gene: Yjha, Bsu12180
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)+Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
symmetry Space Group: P 1 21 1
R_factor 0.231 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.678 41.687 65.656 90.00 91.74 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MSE enzyme
note 3CFU is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3cfu.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (3cfu.pdb2.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 3CFU
  • CSU: Contacts of Structural Units for 3CFU
  • Likely Quarternary Molecular Structure file(s) for 3CFU
  • Structure Factors (388 Kb)
  • Retrieve 3CFU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CFU from S2C, [Save to disk]
  • Re-refined 3cfu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CFU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CFU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CFU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cfu] [3cfu_A] [3cfu_B]
  • SWISS-PROT database: [O34725]
  • Domain organization of [YJHA_BACSU] by SWISSPFAM
    • Other resources with information on 3CFU
  • Community annotation for 3CFU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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