3CFV Histone Chaperone date Mar 04, 2008
title Structural Basis Of The Interaction Of Rbap46rbap48 With Hi
authors X.Y.Pei, N.V.Murzina, W.Zhang, S.Mclaughlin, A.Verreault, B.F.Lu E.D.Laue
compound source
Molecule: Histone-Binding Protein Rbbp7
Chain: B, A
Synonym: Retinoblastoma-Binding Protein 7, Rbbp-7, Retinobl Binding Protein P46, Histone Acetyltransferase Type B Subun Nucleosome-Remodeling Factor Subunit Rbap46;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Rbbp7, Rbap46
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_cell_line: Sf9
Expression_system_vector_type: Pfbdm
Expression_system_vector: Bacmid Vector Dh10bac

Molecule: Histone H4 Peptide
Chain: E, F
Fragment: Unp Residues 25 To 42
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Is Chemically Synthesized.
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.661 44.790 109.592 90.00 90.71 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ARS, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


F, E


Primary referenceStructural Basis for the Recognition of Histone H4 by the Histone-Chaperone RbAp46., Murzina NV, Pei XY, Zhang W, Sparkes M, Vicente-Garcia J, Pratap JV, McLaughlin SH, Ben-Shahar TR, Verreault A, Luisi BF, Laue ED, Structure. 2008 Jul;16(7):1077-85. Epub 2008 Jun 19. PMID:18571423
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (3cfv.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (3cfv.pdb2.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 3CFV
  • CSU: Contacts of Structural Units for 3CFV
  • Likely Quarternary Molecular Structure file(s) for 3CFV
  • Structure Factors (1006 Kb)
  • Retrieve 3CFV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CFV from S2C, [Save to disk]
  • Re-refined 3cfv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CFV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CFV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CFV, from MSDmotif at EBI
  • Fold representative 3cfv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cfv] [3cfv_E] [3cfv_B] [3cfv_F] [3cfv_A]
  • SWISS-PROT database: [P62805] [Q16576]
  • Domain organization of [H4_HUMAN] [RBBP7_HUMAN] by SWISSPFAM
  • Domain found in 3CFV: [WD40 ] by SMART
  • Other resources with information on 3CFV
  • Community annotation for 3CFV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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