3CGL Fluorescent Protein date Mar 05, 2008
title Crystal Structure And Raman Studies Of Dsfp483, A Cyan Fluor Protein From Discosoma Striata
authors G.D.Malo
compound source
Molecule: Gfp-Like Fluorescent Chromoprotein Dsfp483
Chain: A, B, C, D, E, F
Engineered: Yes
 Organism_scientific: Discosoma Striata
Organism_common: Striped Mushroom
Expression_system: Escherichia Coli
Expression_system_strain: Jm109(De3)
Expression_system_vector_type: Plamsid
Expression_system_plasmid: Pqe30
symmetry Space Group: C 1 2 1
R_factor 0.185 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.202 78.269 188.566 90.00 91.35 90.00
method X-Ray Diffractionresolution 2.09 Å
ligand CRQ, NA enzyme
note 3CGL is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structure and Raman studies of dsFP483, a cyan fluorescent protein from Discosoma striata., Malo GD, Wang M, Wu D, Stelling AL, Tonge PJ, Wachter RM, J Mol Biol. 2008 May 9;378(4):869-84. Epub 2008 Mar 19. PMID:18395223
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (3cgl.pdb1.gz) 151 Kb
  • Biological Unit Coordinates (3cgl.pdb2.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 3CGL
  • CSU: Contacts of Structural Units for 3CGL
  • Likely Quarternary Molecular Structure file(s) for 3CGL
  • Structure Factors (1520 Kb)
  • Retrieve 3CGL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CGL from S2C, [Save to disk]
  • Re-refined 3cgl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CGL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CGL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CGL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cgl] [3cgl_C] [3cgl_F] [3cgl_A] [3cgl_B] [3cgl_E] [3cgl_D]
  • SWISS-PROT database: [Q9U6Y7]
  • Domain organization of [GFPL_DISST] by SWISSPFAM
    • Other resources with information on 3CGL
  • Community annotation for 3CGL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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