3CH8 Structural Protein date Mar 08, 2008
title The Crystal Structure Of Pdz-Fibronectin Fusion Protein
authors K.Makabe, J.Huang, A.Koide, S.Koide
compound source
Molecule: Fusion Protein Pdz-Fibronectin,Fibronectin
Chain: A
Synonym: Fn,Cold-Insoluble Globulin,Cig
Engineered: Yes
Other_details: See Remark 400,See Remark 400
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fn1, Fn
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet System

Molecule: C-Terminal Octapeptide From Protein Arvcf
Chain: P
Fragment: C-Terminal Residues
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 32
R_factor 0.201 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.008 69.008 46.706 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for exquisite specificity of affinity clamps, synthetic binding proteins generated through directed domain-interface evolution., Huang J, Makabe K, Biancalana M, Koide A, Koide S, J Mol Biol. 2009 Oct 9;392(5):1221-31. Epub 2009 Jul 30. PMID:19646997
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3ch8.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 3CH8
  • CSU: Contacts of Structural Units for 3CH8
  • Likely Quarternary Molecular Structure file(s) for 3CH8
  • Structure Factors (131 Kb)
  • Retrieve 3CH8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CH8 from S2C, [Save to disk]
  • Re-refined 3ch8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CH8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CH8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CH8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ch8] [3ch8_A] [3ch8_P]
  • SWISS-PROT database: [Q96RT1]
  • Domain organization of [LAP2_HUMAN] by SWISSPFAM
  • Domains found in 3CH8: [FN3] [PDZ ] by SMART
  • Other resources with information on 3CH8
  • Community annotation for 3CH8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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