3CI5 Structural Protein date Mar 10, 2008
title Complex Of Phosphorylated Dictyostelium Discoideum Actin Wit
authors K.Baek, R.Dominguez
compound source
Molecule: Major Actin
Chain: A
Organism_scientific: Dictyostelium Discoideum
Organism_common: Slime Mold

Molecule: Gelsolin
Chain: G
Fragment: Gelsolin Segment 1 (Unp Residues 52-176)
Synonym: Actin-Depolymerizing Factor, Adf, Brevin, Agel
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Gsn
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb12
symmetry Space Group: C 1 2 1
R_factor 0.141 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
178.423 69.045 56.540 90.00 104.20 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand ATP, CA, GOL, HIC, MG, PTR, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


G


Primary referenceModulation of actin structure and function by phosphorylation of Tyr-53 and profilin binding., Baek K, Liu X, Ferron F, Shu S, Korn ED, Dominguez R, Proc Natl Acad Sci U S A. 2008 Aug 8. PMID:18689676
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (3ci5.pdb1.gz) 193 Kb
  • Biological Unit Coordinates (3ci5.pdb2.gz) 382 Kb
  • LPC: Ligand-Protein Contacts for 3CI5
  • CSU: Contacts of Structural Units for 3CI5
  • Likely Quarternary Molecular Structure file(s) for 3CI5
  • Structure Factors (1653 Kb)
  • Retrieve 3CI5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CI5 from S2C, [Save to disk]
  • Re-refined 3ci5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CI5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CI5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CI5, from MSDmotif at EBI
  • Fold representative 3ci5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ci5_A] [3ci5_G] [3ci5]
  • SWISS-PROT database: [P07830] [P06396]
  • Domain organization of [ACT1_DICDI] [GELS_HUMAN] by SWISSPFAM
  • Domains found in 3CI5: [ACTIN] [GEL ] by SMART
  • Alignments of the sequence of 3CI5 with the sequences similar proteins can be viewed for 3CI5's classification [ACT1_DICDI] [GELS_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ACT1_DICDI] [GELS_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3CI5
  • Community annotation for 3CI5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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