3CJN Transcription Regulator date Mar 13, 2008
title Crystal Structure Of Transcriptional Regulator, Marr Family, Silicibacter Pomeroyi
authors C.Chang, L.Volkart, L.Freeman, A.Joachimiak, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Transcriptional Regulator, Marr Family
Chain: A
Engineered: Yes
 Organism_scientific: Silicibacter Pomeroyi Dss-3
Organism_taxid: 246200
Strain: Dss-3 Dsm 15171
Atcc: 700808
Gene: Spo1458
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 43 21 2
R_factor 0.179 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.976 87.976 43.197 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand MSE, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (3cjn.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 3CJN
  • CSU: Contacts of Structural Units for 3CJN
  • Likely Quarternary Molecular Structure file(s) for 3CJN
  • Structure Factors (218 Kb)
  • Retrieve 3CJN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CJN from S2C, [Save to disk]
  • Re-refined 3cjn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CJN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CJN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CJN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cjn] [3cjn_A]
  • SWISS-PROT database: [Q5LTF6]
  • Domain organization of [Q5LTF6_SILPO] by SWISSPFAM
  • Domain found in 3CJN: [HTH_MARR ] by SMART
    • Other resources with information on 3CJN
  • Community annotation for 3CJN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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