3CJR	Transferase Ribosomal Protein	date	Mar 13, 2008
title	Ribosomal Protein L11 Methyltransferase (Prma) In Complex Wi Ribosomal Protein L11 (K39a) And Inhibitor Sinefungin.
authors	H.Demirci, S.T.Gregory, A.E.Dahlberg, G.Jogl
compound		source
Molecule: Ribosomal Protein L11 Methyltransferase Chain: A Synonym: L11 Mtase Ec: 2.1.1.- Engineered: Yes		Organism_scientific: Thermus Thermophilus Strain: Hb8 Gene: Prma Expression_system: Escherichia Coli Expression_system_strain: Bl21 (De3) Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30b
Molecule: 50s Ribosomal Protein L11 Chain: B Engineered: Yes Mutation: Yes		Organism_scientific: Thermus Thermophilus Strain: Hb8 Gene: Rplk, Rpl11 Expression_system: Escherichia Coli Expression_system_strain: Bl21 (De3) Prma::Tc Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: P 65	R_factor 0.213 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 132.742 132.742 46.056 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	SFG	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Multiple-Site Trimethylation of Ribosomal Protein L11 by the PrmA Methyltransferase., Demirci H, Gregory ST, Dahlberg AE, Jogl G, Structure. 2008 Jul;16(7):1059-66. PMID:18611379

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (3cjr.pdb1.gz) 62 Kb LPC: Ligand-Protein Contacts for 3CJR CSU: Contacts of Structural Units for 3CJR Likely Quarternary Molecular Structure file(s) for 3CJR Structure Factors (433 Kb) Retrieve 3CJR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CJR from S2C, [Save to disk] Re-refined 3cjr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CJR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CJR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CJR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cjr_A] [3cjr] [3cjr_B] SWISS-PROT database: [Q84BQ9] [P36238] Domain organization of [PRMA_THET8] [RL11_THETH] by SWISSPFAM Domain found in 3CJR: [RL11 ] by SMART

Other resources with information on 3CJR

Community annotation for 3CJR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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