3CJR Transferase Ribosomal Protein date Mar 13, 2008
title Ribosomal Protein L11 Methyltransferase (Prma) In Complex Wi Ribosomal Protein L11 (K39a) And Inhibitor Sinefungin.
authors H.Demirci, S.T.Gregory, A.E.Dahlberg, G.Jogl
compound source
Molecule: Ribosomal Protein L11 Methyltransferase
Chain: A
Synonym: L11 Mtase
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Strain: Hb8
Gene: Prma
Expression_system: Escherichia Coli
Expression_system_strain: Bl21 (De3) Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30b

Molecule: 50s Ribosomal Protein L11
Chain: B
Engineered: Yes
Mutation: Yes

Organism_scientific: Thermus Thermophilus
Strain: Hb8
Gene: Rplk, Rpl11
Expression_system: Escherichia Coli
Expression_system_strain: Bl21 (De3) Prma::Tc
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 65
R_factor 0.213 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.742 132.742 46.056 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand SFG enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceMultiple-Site Trimethylation of Ribosomal Protein L11 by the PrmA Methyltransferase., Demirci H, Gregory ST, Dahlberg AE, Jogl G, Structure. 2008 Jul;16(7):1059-66. PMID:18611379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3cjr.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 3CJR
  • CSU: Contacts of Structural Units for 3CJR
  • Likely Quarternary Molecular Structure file(s) for 3CJR
  • Structure Factors (433 Kb)
  • Retrieve 3CJR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CJR from S2C, [Save to disk]
  • Re-refined 3cjr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CJR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CJR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CJR, from MSDmotif at EBI
  • Fold representative 3cjr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cjr_A] [3cjr] [3cjr_B]
  • SWISS-PROT database: [Q84BQ9] [P36238]
  • Domain organization of [PRMA_THET8] [RL11_THETH] by SWISSPFAM
  • Domain found in 3CJR: [RL11 ] by SMART
  • Other resources with information on 3CJR
  • Community annotation for 3CJR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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