3CJS	Transferase Ribosomal Protein	date	Mar 13, 2008
title	Minimal Recognition Complex Between Prma And Ribosomal Prote
authors	H.Demirci, S.T.Gregory, A.E.Dahlberg, G.Jogl
compound		source
Molecule: Ribosomal Protein L11 Methyltransferase Chain: A Fragment: N-Terminal Domain Synonym: L11 Mtase Ec: 2.1.1.- Engineered: Yes		Organism_scientific: Thermus Thermophilus Strain: Hb8 Gene: Prma Expression_system: Escherichia Coli Expression_system_strain: Bl21 (De3) Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26b
Molecule: 50s Ribosomal Protein L11 Chain: B, C Fragment: N-Terminal Domain Engineered: Yes		Organism_scientific: Thermus Thermophilus Strain: Hb8 Gene: Rplk, Rpl11 Expression_system: Escherichia Coli Expression_system_strain: Bl21 (De3) Prma::Tc Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: C 1 2 1	R_factor 0.180 R_Free 0.206
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.211 33.948 71.090 90.00 131.76 90.00
method	X-Ray Diffraction	resolution	1.37 Å
ligand	EDO	enzyme	Transferase E.C.2.1.1 BRENDA
note	3CJS is a representative structure
Gene Ontology	Chain Function Process Component C, B
Primary reference	Multiple-Site Trimethylation of Ribosomal Protein L11 by the PrmA Methyltransferase., Demirci H, Gregory ST, Dahlberg AE, Jogl G, Structure. 2008 Jul;16(7):1059-66. PMID:18611379

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (3cjs.pdb1.gz) 25 Kb Biological Unit Coordinates (3cjs.pdb2.gz) 12 Kb LPC: Ligand-Protein Contacts for 3CJS CSU: Contacts of Structural Units for 3CJS Likely Quarternary Molecular Structure file(s) for 3CJS Structure Factors (553 Kb) Retrieve 3CJS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CJS from S2C, [Save to disk] Re-refined 3cjs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CJS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CJS

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3CJS, from MSDmotif at EBI Fold representative 3cjs from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cjs_B] [3cjs_C] [3cjs] [3cjs_A] SWISS-PROT database: [Q84BQ9] [P36238] Domain organization of [PRMA_THET8] [RL11_THETH] by SWISSPFAM Domain found in 3CJS: [RL11 ] by SMART

Other resources with information on 3CJS

Community annotation for 3CJS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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