3CJS	Transferase Ribosomal Protein	date	Mar 13, 2008
title	Minimal Recognition Complex Between Prma And Ribosomal Prote
authors	H.Demirci, S.T.Gregory, A.E.Dahlberg, G.Jogl
compound		source
Molecule: Ribosomal Protein L11 Methyltransferase Chain: A Fragment: N-Terminal Domain Synonym: L11 Mtase Ec: 2.1.1.- Engineered: Yes		Organism_scientific: Thermus Thermophilus Strain: Hb8 Gene: Prma Expression_system: Escherichia Coli Expression_system_strain: Bl21 (De3) Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26b
Molecule: 50s Ribosomal Protein L11 Chain: B, C Fragment: N-Terminal Domain Engineered: Yes		Organism_scientific: Thermus Thermophilus Strain: Hb8 Gene: Rplk, Rpl11 Expression_system: Escherichia Coli Expression_system_strain: Bl21 (De3) Prma::Tc Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: C 1 2 1	R_factor 0.180 R_Free 0.206
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.211 33.948 71.090 90.00 131.76 90.00
method	X-Ray Diffraction	resolution	1.37 Å
ligand	EDO	enzyme	Transferase E.C.2.1.1 BRENDA
note	3CJS is a representative structure
Gene Ontology	Chain Function Process Component C, B
Primary reference	Multiple-Site Trimethylation of Ribosomal Protein L11 by the PrmA Methyltransferase., Demirci H, Gregory ST, Dahlberg AE, Jogl G, Structure. 2008 Jul;16(7):1059-66. PMID:18611379

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk] Biological Unit Coordinates (3cjs.pdb1.gz) 24 Kb Biological Unit Coordinates (3cjs.pdb2.gz) 12 Kb LPC: Ligand-Protein Contacts for 3CJS CSU: Contacts of Structural Units for 3CJS Likely Quarternary Molecular Structure file(s) for 3CJS Structure Factors (553 Kb) Retrieve 3CJS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3CJS from S2C, [Save to disk] Re-refined 3cjs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3CJS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3CJS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3CJS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3cjs_B] [3cjs_C] [3cjs] [3cjs_A] SWISS-PROT database: [Q84BQ9] [P36238] Domain organization of [PRMA_THET8] [RL11_THETH] by SWISSPFAM Domain found in 3CJS: [RL11 ] by SMART

Other resources with information on 3CJS

Community annotation for 3CJS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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