3CJT Transferase Ribosomal Protein date Mar 13, 2008
title Ribosomal Protein L11 Methyltransferase (Prma) In Complex Wi Dimethylated Ribosomal Protein L11
authors H.Demirci, S.T.Gregory, A.E.Dahlberg, G.Jogl
compound source
Molecule: Ribosomal Protein L11 Methyltransferase
Chain: A, C, E, G, I, K, M, O
Synonym: L11 Mtase
Ec: 2.1.1.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermus Thermophilus
Strain: Hb8
Gene: Prma
Expression_system: Escherichia Coli
Expression_system_strain: Bl21 (De3) Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30b

Molecule: 50s Ribosomal Protein L11
Chain: B, D, F, H, J, L, N, P
Engineered: Yes

Organism_scientific: Thermus Thermophilus
Strain: Hb8
Gene: Rplk, Rpl11
Expression_system: Escherichia Coli
Expression_system_strain: Bl21 (De3) Prma::Tc
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 1 2 1
R_factor 0.194 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.822 69.943 379.007 90.00 90.47 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 2MM, CL, EDO, NO3, SAH, SAM enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, N, L, J, P, B, H, D


K, E, M, C, A, O, I, G


Primary referenceMultiple-Site Trimethylation of Ribosomal Protein L11 by the PrmA Methyltransferase., Demirci H, Gregory ST, Dahlberg AE, Jogl G, Structure. 2008 Jul;16(7):1059-66. PMID:18611379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (478 Kb) [Save to disk]
  • Biological Unit Coordinates (3cjt.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (3cjt.pdb2.gz) 59 Kb
  • Biological Unit Coordinates (3cjt.pdb3.gz) 71 Kb
  • Biological Unit Coordinates (3cjt.pdb4.gz) 59 Kb
  • Biological Unit Coordinates (3cjt.pdb5.gz) 70 Kb
  • Biological Unit Coordinates (3cjt.pdb6.gz) 59 Kb
  • Biological Unit Coordinates (3cjt.pdb7.gz) 70 Kb
  • Biological Unit Coordinates (3cjt.pdb8.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3CJT
  • CSU: Contacts of Structural Units for 3CJT
  • Likely Quarternary Molecular Structure file(s) for 3CJT
  • Structure Factors (2417 Kb)
  • Retrieve 3CJT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CJT from S2C, [Save to disk]
  • Re-refined 3cjt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CJT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CJT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CJT, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cjt_C] [3cjt_K] [3cjt_P] [3cjt_E] [3cjt_F] [3cjt_J] [3cjt_G] [3cjt_L] [3cjt_B] [3cjt_H] [3cjt_D] [3cjt_I] [3cjt] [3cjt_A] [3cjt_N] [3cjt_M] [3cjt_O]
  • SWISS-PROT database: [Q84BQ9] [P36238]
  • Domain organization of [PRMA_THET8] [RL11_THETH] by SWISSPFAM
  • Domain found in 3CJT: [RL11 ] by SMART
  • Other resources with information on 3CJT
  • Community annotation for 3CJT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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