3CL4 Hydrolase date Mar 18, 2008
title Crystal Structure Of Bovine Coronavirus Hemagglutinin-Estera
authors Q.H.Zeng, M.A.Langereis, A.L.W.Van Vliet, E.G.Huizinga, R.J.De G
compound source
Molecule: Hemagglutinin-Esterase
Chain: A
Fragment: Residues 19-388
Synonym: He Protein, E3 Glycoprotein
Ec: 3.1.1.53
Engineered: Yes
Organism_scientific: Bovine Coronavirus
Organism_common: Strain Mebus
Strain: Mebus
Gene: He
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_vector_type: Plasmid
Expression_system_plasmid: S1-Ig
symmetry Space Group: P 65 2 2
R_factor 0.179 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.830 88.830 282.360 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand K, NAG enzyme Hydrolase E.C.3.1.1.53 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of coronavirus hemagglutinin-esterase offers insight into corona and influenza virus evolution., Zeng Q, Langereis MA, van Vliet AL, Huizinga EG, de Groot RJ, Proc Natl Acad Sci U S A. 2008 Jul 1;105(26):9065-9. Epub 2008 Jun 11. PMID:18550812
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (3cl4.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 3CL4
  • CSU: Contacts of Structural Units for 3CL4
  • Likely Quarternary Molecular Structure file(s) for 3CL4
  • Structure Factors (576 Kb)
  • Retrieve 3CL4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CL4 from S2C, [Save to disk]
  • Re-refined 3cl4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CL4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CL4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CL4, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cl4] [3cl4_A]
  • SWISS-PROT database: [P15776]
  • Domain organization of [HEMA_CVBM] by SWISSPFAM
  • Other resources with information on 3CL4
  • Community annotation for 3CL4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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