3CLD Transcription date Mar 18, 2008
title Ligand Binding Domain Of The Glucocorticoid Receptor Complex Fluticazone Furoate
authors L.M.Shewchuk, I.Mclay, E.Stewart, K.B.Biggadike, A.M.Hassell, R.K
compound source
Molecule: Glucocorticoid Receptor
Chain: A, B
Fragment: Ligand Binding Domain, Unp Residues 521-777
Synonym: Gr, Nuclear Receptor Subfamily 3 Group C Member 1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Nr3c1, Grl
Expression_system: Escherichia Coli
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Tif2 Coactivator Motif
Chain: H, C
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized, The Can Be Found In Homo Sapiens (Human)
symmetry Space Group: P 61
R_factor 0.207 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.340 127.340 77.772 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.84 Å
ligand GW6 BindingDB enzyme
Primary referenceX-ray Crystal Structure of the Novel Enhanced-Affinity Glucocorticoid Agonist Fluticasone Furoate in the Glucocorticoid Receptor-Ligand Binding Domain., Biggadike K, Bledsoe RK, Hassell AM, Kirk BE, McLay IM, Shewchuk LM, Stewart EL, J Med Chem. 2008 Jun 26;51(12):3349-52. Epub 2008 Jun 4. PMID:18522385
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3cld.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 3CLD
  • CSU: Contacts of Structural Units for 3CLD
  • Likely Quarternary Molecular Structure file(s) for 3CLD
  • Structure Factors (159 Kb)
  • Retrieve 3CLD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CLD from S2C, [Save to disk]
  • Re-refined 3cld structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CLD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CLD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CLD, from MSDmotif at EBI
  • Fold representative 3cld from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cld] [3cld_A] [3cld_H] [3cld_B] [3cld_C]
  • SWISS-PROT database: [P04150] [Q15596]
  • Domain organization of [GCR_HUMAN] [NCOA2_HUMAN] by SWISSPFAM
  • Domain found in 3CLD: [HOLI ] by SMART
  • Alignments of the sequence of 3CLD with the sequences similar proteins can be viewed for 3CLD's classification [GCR_HUMAN] [NCOA2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [GCR_HUMAN] [NCOA2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3CLD
  • Community annotation for 3CLD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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