3CMA The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui date
authors Simonovic, M., Steitz, T.A.
compound source
symmetry
R_factor
R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand 1MA, 8AN, ACA, CD, CL, K, MG, NA, OMG, OMU, PHE, PSU, SR, UR3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
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D


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F
  • ribonuclease P activity


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    N


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    Primary referencePeptidyl-CCA deacylation on the ribosome promoted by induced fit and the O3'-hydroxyl group of A76 of the unacylated A-site tRNA., Simonovic M, Steitz TA, RNA. 2008 Nov;14(11):2372-8. Epub 2008 Sep 25. PMID:18818369
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1992 Kb) [Save to disk]
  • Biological Unit Coordinates (3cma.pdb1.gz) 1970 Kb
  • LPC: Ligand-Protein Contacts for 3CMA
  • CSU: Contacts of Structural Units for 3CMA
  • Likely Quarternary Molecular Structure file(s) for 3CMA
  • Structure Factors (3581 Kb)
  • Retrieve 3CMA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CMA from S2C, [Save to disk]
  • Re-refined 3cma structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CMA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CMA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CMA, from MSDmotif at EBI
  • Fold representative 3cma from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cma_L] [3cma_X] [3cma_F] [3cma_2] [3cma_O] [3cma_0] [3cma_S] [3cma_C] [3cma_G] [3cma_9] [3cma_R] [3cma_B] [3cma_K] [3cma_6] [3cma_U] [3cma_J] [3cma_1] [3cma_I] [3cma_T] [3cma_M] [3cma_W] [3cma_H] [3cma_E] [3cma_N] [3cma_5] [3cma_Z] [3cma_Q] [3cma_D] [3cma_V] [3cma_3] [3cma_P] [3cma] [3cma_Y] [3cma_A]
  • SWISS-PROT database: [P60617] [P14122] [P29198] [P22450] [P60618] [P12737] [P12733] [P14123] [P14119] [P12734] [P10970] [P12732] [P14116] [P10972] [P10971] [P20276] [P14121] [P18138] [P12736] [P60619] [P32410] [P22452] [P20279] [P32411] [P12735] [P14124] [P14135] [P12743] [P15825]
  • Domain organization of [RL10_HALMA] [RL11_HALMA] [RL13_HALMA] [RL14_HALMA] [RL15E_HALMA] [RL15_HALMA] [RL18E_HALMA] [RL18_HALMA] [RL19_HALMA] [RL21_HALMA] [RL22_HALMA] [RL23_HALMA] [RL24E_HALMA] [RL24_HALMA] [RL29_HALMA] [RL2_HALMA] [RL30_HALMA] [RL31_HALMA] [RL32_HALMA] [RL37A_HALMA] [RL37_HALMA] [RL39_HALMA] [RL3_HALMA] [RL44_HALMA] [RL4_HALMA] [RL5_HALMA] [RL6_HALMA] [RL7A_HALMA] [RLA0_HALMA] by SWISSPFAM
  • Domains found in 3CMA: [HhH1] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [TRASH ] by SMART
  • Other resources with information on 3CMA
  • Community annotation for 3CMA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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