3COD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand RET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ion channel activity


    • Primary referenceModest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins., Joh NH, Min A, Faham S, Whitelegge JP, Yang D, Woods VL, Bowie JU, Nature. 2008 May 25;. PMID:18500332
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (3cod.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (3cod.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 3COD
  • CSU: Contacts of Structural Units for 3COD
  • Likely Quarternary Molecular Structure file(s) for 3COD
  • Structure Factors (345 Kb)
  • Retrieve 3COD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3COD from S2C, [Save to disk]
  • Re-refined 3cod structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3COD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cod] [3cod_A] [3cod_B]
  • SWISS-PROT database: [P02945]
  • Belongs to the ion-translocating microbial rhodopsin (mr) family according to TCDB.
  • Domain found in 3COD: [Bac_rhodopsin ] by SMART

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