3COJ Antitumor Protein Ligase date Mar 28, 2008
title Crystal Structure Of The Brct Domains Of Human Brca1 In Comp Phosphorylated Peptide From Human Acetyl-Coa Carboxylase 1
authors Y.Shen, L.Tong
compound source
Molecule: Breast Cancer Type 1 Susceptibility Protein
Chain: X, A, B, C, D, E, F, G
Fragment: Brct1 And Brct2 Domains
Synonym: Ring Finger Protein 53
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brca1, Rnf53
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21star (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Acetyl-Coa Carboxylase 1
Chain: H, I, J, K, L, M, N, O
Fragment: Residues 1258-1270
Synonym: Acc-Alpha
Ec: 6.4.1.2
Engineered: Yes

Synthetic: Yes
Other_details: Synthesized Human Acc1 Peptide With Ser1263 Phosphorylated.
symmetry Space Group: P 21 21 21
R_factor 0.257 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.330 181.513 194.643 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.21 Å
ligand SEP enzyme Ligase E.C.6.4.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, X, E, B, C, D, G


Primary referenceStructural evidence for direct interactions between the BRCT domains of human BRCA1 and a phospho-peptide from human ACC1., Shen Y, Tong L, Biochemistry. 2008 May 27;47(21):5767-73. Epub 2008 May 2. PMID:18452305
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]
  • Biological Unit Coordinates (3coj.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (3coj.pdb2.gz) 37 Kb
  • Biological Unit Coordinates (3coj.pdb3.gz) 38 Kb
  • Biological Unit Coordinates (3coj.pdb4.gz) 38 Kb
  • Biological Unit Coordinates (3coj.pdb5.gz) 37 Kb
  • Biological Unit Coordinates (3coj.pdb6.gz) 37 Kb
  • Biological Unit Coordinates (3coj.pdb7.gz) 37 Kb
  • Biological Unit Coordinates (3coj.pdb8.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 3COJ
  • CSU: Contacts of Structural Units for 3COJ
  • Likely Quarternary Molecular Structure file(s) for 3COJ
  • Structure Factors (742 Kb)
  • Retrieve 3COJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3COJ from S2C, [Save to disk]
  • Re-refined 3coj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3COJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3COJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3COJ, from MSDmotif at EBI
  • Fold representative 3coj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3coj_J] [3coj_B] [3coj_C] [3coj_X] [3coj_K] [3coj] [3coj_A] [3coj_H] [3coj_N] [3coj_M] [3coj_F] [3coj_G] [3coj_I] [3coj_O] [3coj_E] [3coj_D] [3coj_L]
  • SWISS-PROT database: [P38398]
  • Domain organization of [BRCA1_HUMAN] by SWISSPFAM
  • Domain found in 3COJ: [BRCT ] by SMART
  • Alignments of the sequence of 3COJ with the sequences similar proteins can be viewed for 3COJ's classification [BRCA1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [BRCA1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3COJ
  • Community annotation for 3COJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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