3COO Cell Adhesion date Mar 28, 2008
title The Crystal Structure Of Reelin-N Domain Of F-Spondin
authors K.Tan, J.Lawler, J.H.Wang
compound source
Molecule: Spondin-1
Chain: A, B
Fragment: Reelin-N Domain (Unp Residues 29-194)
Synonym: F-Spondin, Vascular Smooth Muscle Cell Growth-Prom Factor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Gene: Homo Sapiens
Expression_system: Drosophila Melanogaster
Expression_system_cell_line: S2 Cell
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmtbip V5-Hisa
symmetry Space Group: P 43 21 2
R_factor 0.206 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.605 58.605 219.542 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Primary referenceThe crystal structure of the heparin-binding reelin-N domain of f-spondin., Tan K, Duquette M, Liu JH, Lawler J, Wang JH, J Mol Biol. 2008 Sep 19;381(5):1213-23. Epub 2008 Jun 24. PMID:18602404
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3coo.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 3COO
  • Likely Quarternary Molecular Structure file(s) for 3COO
  • Structure Factors (385 Kb)
  • Retrieve 3COO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3COO from S2C, [Save to disk]
  • Re-refined 3coo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3COO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3COO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3COO, from MSDmotif at EBI
  • Fold representative 3coo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3coo_B] [3coo] [3coo_A]
  • SWISS-PROT database: [Q9HCB6]
  • Domain organization of [SPON1_HUMAN] by SWISSPFAM
  • Other resources with information on 3COO
  • Community annotation for 3COO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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