3CP5 Electron Transport date Mar 31, 2008
title Cytochrome C From Rhodothermus Marinus
authors M.Stelter, A.Melo, L.Saraiva, M.Teixeira, M.Archer
compound source
Molecule: Cytochrome C
Chain: A
Fragment: Unp Residues 29-152
Engineered: Yes
Organism_scientific: Rhodothermus Marinus
Organism_common: Rhodothermus Obamensis
Organism_taxid: 29549
Gene: Cytc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.592 32.644 42.064 90.00 94.56 90.00
method X-Ray Diffractionresolution 1.24 Å
ligand HEC, SO4 enzyme
note 3CP5 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA Novel Type of Monoheme Cytochrome c: Biochemical and Structural Characterization at 1.23 A Resolution of Rhodothermus marinus Cytochrome c., Stelter M, Melo AM, Pereira MM, Gomes CM, Hreggvidsson GO, Hjorleifsdottir S, Saraiva LM, Teixeira M, Archer M, Biochemistry. 2008 Oct 15. PMID:18855424
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3cp5.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 3CP5
  • CSU: Contacts of Structural Units for 3CP5
  • Likely Quarternary Molecular Structure file(s) for 3CP5
  • Structure Factors (251 Kb)
  • Retrieve 3CP5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CP5 from S2C, [Save to disk]
  • Re-refined 3cp5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CP5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CP5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CP5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cp5] [3cp5_A]
  • SWISS-PROT database: [B3FQS5]
  • Domain organization of [B3FQS5_RHOMR] by SWISSPFAM
  • Other resources with information on 3CP5
  • Community annotation for 3CP5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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