3CPG Structural Genomics, Unknown Function date Mar 31, 2008
title Crystal Structure Of An Unknown Protein From Bifidobacterium Adolescentis
authors R.Sugadev, S.K.Burley, S.Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
compound source
Molecule: Uncharacterized Protein
Chain: A
Engineered: Yes
 Organism_scientific: Bifidobacterium Adolescentis Atcc 1570
Organism_taxid: 367928
Strain: Dsm 20083
Gene: Bad_1471
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3(Bc)
symmetry Space Group: P 65
R_factor 0.175 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.242 48.242 181.319 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.71 Å
ligand ACT, MSE enzyme
Gene BAD
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3cpg.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3CPG
  • CSU: Contacts of Structural Units for 3CPG
  • Likely Quarternary Molecular Structure file(s) for 3CPG
  • Structure Factors (182 Kb)
  • Retrieve 3CPG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CPG from S2C, [Save to disk]
  • Re-refined 3cpg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CPG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CPG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CPG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cpg_A] [3cpg]
  • SWISS-PROT database: [A1A3G9]
  • Domain organization of [A1A3G9_BIFAA] by SWISSPFAM
    • Other resources with information on 3CPG
  • Community annotation for 3CPG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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