3CQC Protein Transport date Apr 02, 2008
title Nucleoporin Nup107nup133 Interaction Complex
authors S.Jeudy, T.Boehmer, I.Berke, T.U.Schwartz
compound source
Molecule: Nuclear Pore Complex Protein Nup107
Chain: A
Fragment: Residues 658-925
Synonym: Nucleoporin Nup107, 107 Kda Nucleoporin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nup107
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t2

Molecule: Nuclear Pore Complex Protein Nup133
Chain: B
Fragment: Residues 935-1156
Synonym: Nucleoporin Nup133, 133 Kda Nucleoporin
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nup133
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: C 1 2 1
R_factor 0.217 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.744 127.936 152.738 90.00 97.36 90.00
method X-Ray Diffractionresolution 2.53 Å
note 3CQC is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural and functional studies of Nup107/Nup133 interaction and its implications for the architecture of the nuclear pore complex., Boehmer T, Jeudy S, Berke IC, Schwartz TU, Mol Cell. 2008 Jun 20;30(6):721-31. PMID:18570875
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (3cqc.pdb1.gz) 72 Kb
  • CSU: Contacts of Structural Units for 3CQC
  • Likely Quarternary Molecular Structure file(s) for 3CQC
  • Structure Factors (289 Kb)
  • Retrieve 3CQC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CQC from S2C, [Save to disk]
  • Re-refined 3cqc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CQC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CQC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CQC, from MSDmotif at EBI
  • Fold representative 3cqc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cqc_A] [3cqc_B] [3cqc]
  • SWISS-PROT database: [P57740] [Q8WUM0]
  • Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB.
  • Domain organization of [NU107_HUMAN] [NU133_HUMAN] by SWISSPFAM
  • Other resources with information on 3CQC
  • Community annotation for 3CQC at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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