3CVF Crystal Structure of the carboxy terminus of Homer3 date
authors Hayashi, M.K., Stearns, M.H., Giannini, V., Xu, R.M., Sala, C., Hayashi, Y.
compound source
symmetry
R_factor
R_Free .28698
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand MSE enzyme
Primary referenceThe postsynaptic density proteins Homer and Shank form a polymeric network structure., Hayashi MK, Tang C, Verpelli C, Narayanan R, Stearns MH, Xu RM, Li H, Sala C, Hayashi Y, Cell. 2009 Apr 3;137(1):159-71. PMID:19345194
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3cvf.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (3cvf.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (3cvf.pdb3.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 3CVF
  • CSU: Contacts of Structural Units for 3CVF
  • Likely Quarternary Molecular Structure file(s) for 3CVF
  • Structure Factors (366 Kb)
  • Retrieve 3CVF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CVF from S2C, [Save to disk]
  • Re-refined 3cvf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CVF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CVF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CVF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cvf_A] [3cvf_C] [3cvf] [3cvf_B] [3cvf_D]
  • SWISS-PROT database: [Q9NSC5]
  • Domain organization of [HOME3_HUMAN] by SWISSPFAM
    • Other resources with information on 3CVF
  • Community annotation for 3CVF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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