3CVU Lyase Dna date Apr 20, 2008
title Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna Wit (6-4) Photolesion
authors M.J.Maul, T.R.M.Barends, A.F.Glas, M.J.Cryle, I.Schlichting, T.Ca
compound source
Molecule: Dna (5'-D(Dapdcpdapdgpdcpdgpdgp(64t)P(5p Pdgpdcpdapdgpdgpdt)-3');
Chain: C
Engineered: Yes
Other_details: Dna With (6-4) Photolesion
Synthetic: Yes

Molecule: Dna (5'- D(Dtpdapdcpdcpdtpdgpdcpdapdapdcpdcpdgpdcpdtp
Chain: D
Engineered: Yes

Synthetic: Yes

Molecule: Re11660p
Chain: A
Engineered: Yes

Organism_scientific: Drosophila Melanogaster
Organism_taxid: 7227
Gene: Phr64-520
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta-Gami Plyss (De-3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Derived From Pdest007
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.948 89.385 91.251 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 5PY, 64T, FAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure and Mechanism of a DNA (6-4) Photolyase., Maul MJ, Barends TR, Glas AF, Cryle MJ, Domratcheva T, Schneider S, Schlichting I, Carell T, Angew Chem Int Ed Engl. 2008 Oct 27. PMID:18956392
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (3cvu.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 3CVU
  • CSU: Contacts of Structural Units for 3CVU
  • Likely Quarternary Molecular Structure file(s) for 3CVU
  • Structure Factors (364 Kb)
  • Retrieve 3CVU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CVU from S2C, [Save to disk]
  • Re-refined 3cvu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CVU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CVU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CVU, from MSDmotif at EBI
  • Fold representative 3cvu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cvu] [3cvu_C] [3cvu_D] [3cvu_A]
  • SWISS-PROT database: [Q8SXK5]
  • Domain organization of [Q8SXK5_DROME] by SWISSPFAM
  • Other resources with information on 3CVU
  • Community annotation for 3CVU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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