3CW3 Oncoprotein date Apr 21, 2008
title Crystal Structure Of Aim1g1
authors P.Aravind, R.Sankaranarayanan, Y.Sharma
compound source
Molecule: Absent In Melanoma 1 Protein
Chain: A
Fragment: Non-Lens Vertebrate Beta-Gamma-Crystallin Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aim1
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet17b
symmetry Space Group: P 65
R_factor 0.181 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.964 54.964 59.574 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.88 Å
ligand GOL enzyme
Primary referenceExploring the limits of sequence and structure in a variant betagamma-crystallin domain of the protein absent in melanoma-1 (AIM1)., Aravind P, Wistow G, Sharma Y, Sankaranarayanan R, J Mol Biol. 2008 Sep 5;381(3):509-18. Epub 2008 Jun 14. PMID:18582473
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (3cw3.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 3CW3
  • CSU: Contacts of Structural Units for 3CW3
  • Likely Quarternary Molecular Structure file(s) for 3CW3
  • Structure Factors (147 Kb)
  • Retrieve 3CW3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CW3 from S2C, [Save to disk]
  • Re-refined 3cw3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CW3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CW3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CW3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cw3_A] [3cw3]
  • SWISS-PROT database: [Q9Y4K1]
  • Domain organization of [AIM1_HUMAN] by SWISSPFAM
  • Domain found in 3CW3: [XTALbg ] by SMART
  • Other resources with information on 3CW3
  • Community annotation for 3CW3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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