3CWB Oxidoreductase date Apr 21, 2008
title Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Ana The Polyketide Crocacin-D
authors L.Huang, T.Cromartie, R.Viner, P.J.Crowley, E.A.Berry
compound source
Molecule: Mitochondrial Ubiquinol-Cytochrome-C Reductase Co Protein I;
Chain: A, N
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome-C Reductase Co Protein 2;
Chain: B, O

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Cytochrome B
Chain: C, P
Synonym: Ubiquinol-Cytochrome-C Reductase Complex Cytochrom Subunit, Cytochrome B-C1 Complex Subunit 3, Complex III Sub Complex III Subunit III;

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Cytochrome C1, Heme Protein
Chain: D, Q

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase Ir Protein;
Chain: E, R

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase 14 Protein;
Chain: F, S

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase Ub Binding Protein Qp-C;
Chain: G, T

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase 11 Protein, Complex III Subunit Viii;
Chain: H, U

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase Ir Subunit, Leader Sequence;
Chain: I, V

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031

Molecule: Mitochondrial Ubiquinol-Cytochrome C Reductase 7. Protein;
Chain: J, W

Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 21 21 21
R_factor 0.285 R_Free 0.319
crystal
cell
length a length b length c angle alpha angle beta angle gamma
174.778 182.663 242.945 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.51 Å
ligand AZI, BOG, CDL, FES, HEC, HEM, ICX, PEE, UNL, UQ enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, P


E, R


H, U


J, W


N, A, O, B
  • ubiquinol-cytochrome-c reduc...


  • Q, D


    S, F


    T, G
  • ubiquinol-cytochrome-c reduc...


  • V, I


    Primary referenceThe role of molecular modeling in the design of analogues of the fungicidal natural products crocacins A and D., Crowley PJ, Berry EA, Cromartie T, Daldal F, Godfrey CR, Lee DW, Phillips JE, Taylor A, Viner R, Bioorg Med Chem. 2008 Dec 15;16(24):10345-55. Epub 2008 Oct 17. PMID:18996700
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (665 Kb) [Save to disk]
  • Biological Unit Coordinates (3cwb.pdb1.gz) 651 Kb
  • LPC: Ligand-Protein Contacts for 3CWB
  • CSU: Contacts of Structural Units for 3CWB
  • Likely Quarternary Molecular Structure file(s) for 3CWB
  • Structure Factors (893 Kb)
  • Retrieve 3CWB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CWB from S2C, [Save to disk]
  • Re-refined 3cwb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CWB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CWB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CWB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cwb_W] [3cwb_Q] [3cwb_S] [3cwb_J] [3cwb_V] [3cwb_R] [3cwb_N] [3cwb_D] [3cwb_G] [3cwb_E] [3cwb_F] [3cwb_A] [3cwb_H] [3cwb_C] [3cwb_U] [3cwb] [3cwb_I] [3cwb_T] [3cwb_B] [3cwb_P] [3cwb_O]
  • SWISS-PROT database: [P18946] [Q5ZLR5]
  • Domain organization of [CYB_CHICK] [UCRI_CHICK] by SWISSPFAM
  • Other resources with information on 3CWB
  • Community annotation for 3CWB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science