3CX9 Structural Protein date Apr 24, 2008
title Crystal Structure Of Human Serum Albumin Complexed With Myri And Lysophosphatidylethanolamine
authors S.Guo, F.Yang, L.Chen, C.Bian, M.Huang
compound source
Molecule: Serum Albumin
Chain: A
Fragment: Unp Residues 27-608
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Human Serum Albumin
symmetry Space Group: C 1 2 1
R_factor 0.219 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
183.888 39.015 95.633 90.00 104.69 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand LPX, MYR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of transport of lysophospholipids by human serum albumin., Guo S, Shi X, Yang F, Chen L, Meehan EJ, Bian C, Huang M, Biochem J. 2009 Sep 14;423(1):23-30. PMID:19601929
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (3cx9.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 3CX9
  • CSU: Contacts of Structural Units for 3CX9
  • Likely Quarternary Molecular Structure file(s) for 3CX9
  • Structure Factors (251 Kb)
  • Retrieve 3CX9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CX9 from S2C, [Save to disk]
  • Re-refined 3cx9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CX9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CX9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CX9, from MSDmotif at EBI
  • Fold representative 3cx9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cx9_A] [3cx9]
  • SWISS-PROT database: [P02768]
  • Domain organization of [ALBU_HUMAN] by SWISSPFAM
  • Domain found in 3CX9: [ALBUMIN ] by SMART
  • Alignments of the sequence of 3CX9 with the sequences similar proteins can be viewed for 3CX9's classification [ALBU_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ALBU_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3CX9
  • Community annotation for 3CX9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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