3CXE Cytokine date Apr 24, 2008
title Structure Of The Gm-Csf Receptor Complex
authors G.Hansen, T.R.Hercus, J.M.Woodcock, B.J.Mcclure, F.C.Stomski, Y.X W.J.Mckinstry, A.F.Lopez, M.W.Parker
compound source
Molecule: Cytokine Receptor Common Subunit Beta
Chain: A
Fragment: Residues 25-438
Synonym: Gm-Csfil-3il-5 Receptor Common Beta-Chain, Cd131 Cdw131;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csf2rb, Il3rb, Il5rb
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Granulocyte-Macrophage Colony-Stimulating Factor
Chain: B
Synonym: Gm-Csf, Colony-Stimulating Factor, Csf, Sargramost Molgramostin;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csf2, Gmcsf
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Granulocyte-Macrophage Colony-Stimulating Factor Subunit Alpha;
Chain: C
Synonym: Gm-Csf-R-Alpha, Gmr, Cd116 Antigen, Cdw116
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csf2ra, Csf2r, Csf2ry
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 63 2 2
R_factor 0.270 R_Free 0.317
crystal
cell
length a length b length c angle alpha angle beta angle gamma
166.656 166.656 213.132 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
ligand BMA, NAG enzyme
note 3CXE is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceThe structure of the GM-CSF receptor complex reveals a distinct mode of cytokine receptor activation., Hansen G, Hercus TR, McClure BJ, Stomski FC, Dottore M, Powell J, Ramshaw H, Woodcock JM, Xu Y, Guthridge M, McKinstry WJ, Lopez AF, Parker MW, Cell. 2008 Aug 8;134(3):496-507. PMID:18692472
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (3cxe.pdb1.gz) 202 Kb
  • Biological Unit Coordinates (3cxe.pdb2.gz) 402 Kb
  • LPC: Ligand-Protein Contacts for 3CXE
  • CSU: Contacts of Structural Units for 3CXE
  • Likely Quarternary Molecular Structure file(s) for 3CXE
  • Structure Factors (403 Kb)
  • Retrieve 3CXE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CXE from S2C, [Save to disk]
  • Re-refined 3cxe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CXE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CXE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CXE, from MSDmotif at EBI
  • Fold representative 3cxe from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cxe_C] [3cxe_B] [3cxe] [3cxe_A]
  • SWISS-PROT database: [P15509] [P04141] [P32927]
  • Domain organization of [CSF2R_HUMAN] [CSF2_HUMAN] [IL3RB_HUMAN] by SWISSPFAM
  • Domains found in 3CXE: [CSF2] [FN3 ] by SMART
  • Alignments of the sequence of 3CXE with the sequences similar proteins can be viewed for 3CXE's classification [CSF2R_HUMAN] [CSF2_HUMAN] [IL3RB_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CSF2R_HUMAN] [CSF2_HUMAN] [IL3RB_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3CXE
  • Community annotation for 3CXE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science