3CZA Unknown Function date Apr 28, 2008
title Crystal Structure Of E18d Dj-1
authors A.C.Witt, M.Lakshminarasimhan, B.C.Remington, S.Hashim, E.Pozharski, M.A.Wilson
compound source
Molecule: Protein Dj-1
Chain: A
Synonym: Oncogene Dj-1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Park7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: P 31 2 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.826 74.826 74.777 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.20 Å
ligand MLA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCysteine pKa depression by a protonated glutamic acid in human DJ-1., Witt AC, Lakshminarasimhan M, Remington BC, Hasim S, Pozharski E, Wilson MA, Biochemistry. 2008 Jul 15;47(28):7430-40. Epub 2008 Jun 21. PMID:18570440
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3cza.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 3CZA
  • CSU: Contacts of Structural Units for 3CZA
  • Likely Quarternary Molecular Structure file(s) for 3CZA
  • Structure Factors (647 Kb)
  • Retrieve 3CZA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CZA from S2C, [Save to disk]
  • Re-refined 3cza structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3CZA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3CZA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3CZA, from MSDmotif at EBI
  • Fold representative 3cza from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3cza_A] [3cza]
  • SWISS-PROT database: [Q99497]
  • Domain organization of [PARK7_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 3CZA with the sequences similar proteins can be viewed for 3CZA's classification [PARK7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PARK7_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 3CZA
  • Community annotation for 3CZA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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