3CZW Rna date Apr 30, 2008
title X-Ray Structures Of The (Guggucugaugaggcc) Rna Duplex
authors W.Rypniewski, D.A.Adamiak, J.Milecki, R.W.Adamiak
compound source
Molecule: Rna (5'-R(Gupgpgpupcpupgpapupgpapgp 3');
Chain: X
Fragment: Duplex Formed By The Shorter Strands Of Hammerhea Ribozyme;
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.035 31.863 39.804 90.00 134.35 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand SO4 enzyme
Primary referenceNoncanonical G(syn)-G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex., Rypniewski W, Adamiak DA, Milecki J, Adamiak RW, RNA. 2008 Sep;14(9):1845-51. Epub 2008 Jul 24. PMID:18658118
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (3czw.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 3CZW
  • CSU: Contacts of Structural Units for 3CZW
  • Likely Quarternary Molecular Structure file(s) for 3CZW
  • Structure Factors (62 Kb)
  • Retrieve 3CZW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3CZW from S2C, [Save to disk]
  • Re-refined 3czw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3CZW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3CZW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3CZW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3czw_X] [3czw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3CZW
  • Community annotation for 3CZW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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