3D0B Chaperone date May 01, 2008
title Crystal Structure Of Benzamide Tetrahydro-4h-Carbazol-4-One Bound To Hsp90
authors T.E.Barta, J.M.Veal, K.H.Huang, S.H.Hall
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Fragment: N-Terminal Domain Residues 1-232
Synonym: Hsp 86, Renal Carcinoma Antigen Ny- Ren-38
Organism_scientific: Homo Sapiens
Organism_common: Human
symmetry Space Group: I 2 2 2
R_factor 0.200 R_Free 0.228
length a length b length c angle alpha angle beta angle gamma
66.853 90.595 98.215 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.74 Å
ligand SNX enzyme

Primary referenceDiscovery of benzamide tetrahydro-4H-carbazol-4-ones as novel small molecule inhibitors of Hsp90., Barta TE, Veal JM, Rice JW, Partridge JM, Fadden RP, Ma W, Jenks M, Geng L, Hanson GJ, Huang KH, Barabasz AF, Foley BE, Otto J, Hall SE, Bioorg Med Chem Lett. 2008 Jun 15;18(12):3517-21. Epub 2008 May 9. PMID:18511277
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3d0b.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3D0B
  • CSU: Contacts of Structural Units for 3D0B
  • Likely Quarternary Molecular Structure file(s) for 3D0B
  • Structure Factors (307 Kb)
  • Retrieve 3D0B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D0B from S2C, [Save to disk]
  • Re-refined 3d0b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D0B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D0B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3D0B, from MSDmotif at EBI
  • Fold representative 3d0b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d0b_A] [3d0b]
  • SWISS-PROT database: [P07900]
  • Domain organization of [HS90A_HUMAN] by SWISSPFAM
  • Domain found in 3D0B: [HATPase_c ] by SMART
  • Other resources with information on 3D0B
  • Community annotation for 3D0B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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