3D0B	Chaperone	date	May 01, 2008
title	Crystal Structure Of Benzamide Tetrahydro-4h-Carbazol-4-One Hsp90
authors	T.E.Barta, J.M.Veal, K.H.Huang, S.H.Hall
compound		source
Molecule: Heat Shock Protein Hsp 90-Alpha Chain: A Fragment: N-Terminal Domain Residues 1-232 Synonym: Hsp 86, Renal Carcinoma Antigen Ny- Ren-38		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: I 2 2 2	R_factor 0.200 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.853 90.595 98.215 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.74 Å
ligand	SNX	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery of benzamide tetrahydro-4H-carbazol-4-ones as novel small molecule inhibitors of Hsp90., Barta TE, Veal JM, Rice JW, Partridge JM, Fadden RP, Ma W, Jenks M, Geng L, Hanson GJ, Huang KH, Barabasz AF, Foley BE, Otto J, Hall SE, Bioorg Med Chem Lett. 2008 Jun 15;18(12):3517-21. Epub 2008 May 9. PMID:18511277

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (3d0b.pdb1.gz) 39 Kb LPC: Ligand-Protein Contacts for 3D0B CSU: Contacts of Structural Units for 3D0B Likely Quarternary Molecular Structure file(s) for 3D0B Structure Factors (307 Kb) Retrieve 3D0B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D0B from S2C, [Save to disk] Re-refined 3d0b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D0B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D0B

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D0B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d0b_A] [3d0b] SWISS-PROT database: [P07900] Domain organization of [HS90A_HUMAN] by SWISSPFAM Domain found in 3D0B: [HATPase_c ] by SMART

Other resources with information on 3D0B

Community annotation for 3D0B at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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