3D0H Hydrolase date May 01, 2008
title Crystal Structure Of Spike Protein Receptor-Binding Domain F 2002-2003 Sars Coronavirus Civet Strain Complexed With Huma Chimeric Receptor Ace2
authors F.Li
compound source
Molecule: Angiotensin-Converting Enzyme 2
Chain: A, B
Synonym: Ace-Related Carboxypeptidase,Angiotensin-Convertin Homolog,Aceh,Metalloprotease Mprot15;
Ec: 3.4.17.23
Engineered: Yes
Organism_scientific: Paguma Larvata, Homo Sapiens
Organism_common: Masked Palm Civet, Human
Organism_taxid: 9675, 9606
Gene: Ace2, Ace2, Unq868pro1885
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac I

Molecule: Spike Glycoprotein
Chain: E, F
Fragment: Residues 324-502
Synonym: S Glycoprotein,E2,Peplomer Protein
Engineered: Yes

Organism_scientific: Human Sars Coronavirus
Organism_common: Sars-Cov
Organism_taxid: 227859
Gene: S, 2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac I
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.352 119.841 109.420 90.00 95.89 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand CL, NAG, NDG, ZN enzyme Hydrolase E.C.3.4.17.23 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural analysis of major species barriers between humans and palm civets for severe acute respiratory syndrome coronavirus infections., Li F, J Virol. 2008 Jul;82(14):6984-91. Epub 2008 Apr 30. PMID:18448527
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (487 Kb) [Save to disk]
  • Biological Unit Coordinates (3d0h.pdb1.gz) 478 Kb
  • Biological Unit Coordinates (3d0h.pdb2.gz) 240 Kb
  • Biological Unit Coordinates (3d0h.pdb3.gz) 243 Kb
  • LPC: Ligand-Protein Contacts for 3D0H
  • CSU: Contacts of Structural Units for 3D0H
  • Likely Quarternary Molecular Structure file(s) for 3D0H
  • Structure Factors (279 Kb)
  • Retrieve 3D0H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D0H from S2C, [Save to disk]
  • Re-refined 3d0h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D0H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D0H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3D0H, from MSDmotif at EBI
  • Fold representative 3d0h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d0h_B] [3d0h_E] [3d0h_F] [3d0h_A] [3d0h]
  • SWISS-PROT database: [Q9BYF1] [P59594]
  • Domain organization of [ACE2_HUMAN] [SPIKE_CVHSA] by SWISSPFAM
  • Other resources with information on 3D0H
  • Community annotation for 3D0H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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