OCA Atlas for 3D12

3D12

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BGC, BMA, GL0, GLC, GXL, LXB, LXZ, MAN, NAG, NGA, NGZ, SO4

enzyme

note

3D12 is a representative structure

Gene
Ontology

Chain	Function	Process	Component
A, D
E, B

Primary reference

Host cell recognition by the henipaviruses: crystal structures of the Nipah G attachment glycoprotein and its complex with ephrin-B3., Xu K, Rajashankar KR, Chan YP, Himanen JP, Broder CC, Nikolov DB, Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9953-8. Epub 2008 Jul 16. PMID:18632560

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (202 Kb) [Save to disk]

Biological Unit Coordinates (3d12.pdb1.gz) 192 Kb

Biological Unit Coordinates (3d12.pdb2.gz) 98 Kb

Biological Unit Coordinates (3d12.pdb3.gz) 98 Kb

LPC: Ligand-Protein Contacts for 3D12

CSU: Contacts of Structural Units for 3D12

Likely Quarternary Molecular Structure file(s) for 3D12

Structure Factors (305 Kb)

Retrieve 3D12 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3D12 from S2C, [Save to disk]

Re-refined 3d12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D12 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d12] [3d12_A] [3d12_B] [3d12_D] [3d12_E]

SWISS-PROT database: [O35393] [Q9IH62]

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