3D1I		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CA, HEC, NA, NO2, PG4, PG6	enzyme
Gene Ontology	Chain Function Process Component B, A
Primary reference	High-resolution structural analysis of a novel octaheme cytochrome c nitrite reductase from the haloalkaliphilic bacterium Thioalkalivibrio nitratireducens., Polyakov KM, Boyko KM, Tikhonova TV, Slutsky A, Antipov AN, Zvyagilskaya RA, Popov AN, Bourenkov GP, Lamzin VS, Popov VO, J Mol Biol. 2009 Jun 26;389(5):846-62. Epub 2009 Apr 23. PMID:19393666

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (370 Kb) [Save to disk] Biological Unit Coordinates (3d1i.pdb1.gz) 1047 Kb LPC: Ligand-Protein Contacts for 3D1I CSU: Contacts of Structural Units for 3D1I Likely Quarternary Molecular Structure file(s) for 3D1I Structure Factors (1840 Kb) Retrieve 3D1I in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D1I from S2C, [Save to disk] Re-refined 3d1i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D1I in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d1i] [3d1i_A] [3d1i_B] SWISS-PROT database: [Q5F2I3]

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