3D29 Hydrolase date May 07, 2008
title Proteasome Inhibition By Fellutamide B
authors M.Groll, J.Hines, M.Fahnestock, M.C.Crews
compound source
Molecule: Proteasome Component Y7
Chain: A, O
Synonym: Macropain Subunit Y7, Proteinase Ysce Subunit 7, Multicatalytic Endopeptidase Complex Subunit Y7;
Ec: 3.4.25.1
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component Y13
Chain: B, P
Synonym: Macropain Subunit Y13, Proteinase Ysce Subunit 13, Multicatalytic Endopeptidase Complex Subunit Y13;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component Pre6
Chain: C, Q
Synonym: Macropain Subunit Pre6, Proteinase Ysce Subunit Pre6, Multicatalytic Endopeptidase Complex Subunit Pre6;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component Pup2
Chain: D, R
Synonym: Macropain Subunit Pup2, Proteinase Ysce Subunit Pup2, Multicatalytic Endopeptidase Complex Subunit Pup2;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component Pre5
Chain: E, S
Synonym: Macropain Subunit Pre5, Proteinase Ysce Subunit Pre5, Multicatalytic Endopeptidase Complex Subunit Pre5;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component C1
Chain: F, T
Synonym: Macropain Subunit C1, Proteinase Ysce Subunit 1, Multicatalytic Endopeptidase Complex Subunit C1;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component C7-Alpha
Chain: G, U
Synonym: Macropain Subunit C7-Alpha, Proteinase Ysce Subunit 7, Multicatalytic Endopeptidase Complex C7, Proteasome Component Y8, Scl1 Suppressor Protein;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component Pup1 Precursor
Chain: H, V
Synonym: Macropain Subunit Pup1, Proteinase Ysce Subunit Pup1, Multicatalytic Endopeptidase Complex Subunit Pup1;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component Pup3
Chain: I, W
Synonym: Macropain Subunit Pup3, Multicatalytic Endopeptidase Complex Subunit Pup3;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component C11
Chain: J, X
Synonym: Macropain Subunit C11, Proteinase Ysce Subunit 11, Multicatalytic Endopeptidase Complex Subunit C11;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component Pre2 Precursor
Chain: K, Y
Synonym: Macropain Subunit Pre2, Proteinase Ysce Subunit Pre2, Multicatalytic Endopeptidase Complex Subunit Pre2;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component C5 Precursor
Chain: L, Z
Synonym: Multicatalytic Endopeptidase Complex Subunit C5
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component Pre4 Precursor
Chain: M, 1
Synonym: Macropain Subunit Pre4, Proteinase Ysce Subunit Pre4, Multicatalytic Endopeptidase Complex Subunit Pre4;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate

Molecule: Proteasome Component Pre3 Precursor
Chain: N, 2
Synonym: Macropain Subunit Pre3, Proteinase Ysce Subunit Pre3, Multicatalytic Endopeptidase Complex Subunit Pre3;
Ec: 3.4.25.1

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Strain: Bakers Yeast
Other_details: Native Purification From Cell Lysate
symmetry Space Group: P 1 21 1
R_factor 0.240 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.272 301.580 143.454 90.00 112.70 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand FEB enzyme Hydrolase E.C.3.4.25.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
1, M


A, O

  • proteasome core complex, alp...
  • D, R

  • proteasome core complex, alp...
  • F, T


    G, U

  • proteasome core complex, alp...
  • J, X
  • endopeptidase activator acti...

  • proteasome core complex, bet...
  • K, Y, V, H


    N, 2

  • proteasome core complex, bet...
  • P, B

  • proteasome core complex, alp...
  • Q, C


    S, E

  • proteasome core complex, alp...
  • W, I
  • endopeptidase activator acti...

  • proteasome core complex, bet...
  • Z, L

  • proteasome core complex, bet...
  • Primary referenceProteasome inhibition by fellutamide B induces nerve growth factor synthesis., Hines J, Groll M, Fahnestock M, Crews CM, Chem Biol. 2008 May;15(5):501-12. PMID:18482702
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1037 Kb) [Save to disk]
  • Biological Unit Coordinates (3d29.pdb1.gz) 1029 Kb
  • LPC: Ligand-Protein Contacts for 3D29
  • CSU: Contacts of Structural Units for 3D29
  • Likely Quarternary Molecular Structure file(s) for 3D29
  • Structure Factors (2803 Kb)
  • Retrieve 3D29 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D29 from S2C, [Save to disk]
  • Re-refined 3d29 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D29 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D29
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3D29, from MSDmotif at EBI
  • Fold representative 3d29 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d29_S] [3d29_P] [3d29_Q] [3d29_Y] [3d29_D] [3d29_U] [3d29_C] [3d29] [3d29_N] [3d29_R] [3d29_Z] [3d29_H] [3d29_X] [3d29_2] [3d29_A] [3d29_T] [3d29_1] [3d29_E] [3d29_V] [3d29_F] [3d29_O] [3d29_W] [3d29_M] [3d29_L] [3d29_I] [3d29_G] [3d29_B] [3d29_K] [3d29_J]
  • SWISS-PROT database: [P40302] [P23639] [P21242] [P23638] [P32379] [P21243] [P40303] [P23724] [P22141] [P25451] [P30657] [P30656] [P38624] [P25043]
  • Domain organization of [PSA1_YEAST] [PSA2_YEAST] [PSA3_YEAST] [PSA4_YEAST] [PSA5_YEAST] [PSA6_YEAST] [PSA7_YEAST] [PSB1_YEAST] [PSB2_YEAST] [PSB3_YEAST] [PSB4_YEAST] [PSB5_YEAST] [PSB6_YEAST] [PSB7_YEAST] by SWISSPFAM
  • Domain found in 3D29: [Proteasome_A_N ] by SMART
  • Other resources with information on 3D29
  • Community annotation for 3D29 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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