3D32 Transport Protein date May 09, 2008
title Complex Of Gaba(A) Receptor-Associated Protein (Gabarap) Wit Synthetic Peptide
authors O.H.Weiergraeber, T.Stangler, D.Willbold
compound source
Molecule: Gamma-Aminobutyric Acid Receptor-Associated Prote
Chain: A, B
Synonym: Gaba(A) Receptor-Associated Protein,Mm46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gabarap, Flc3b, Ht004
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid

Molecule: K1 Peptide
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.177 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.287 35.415 58.209 90.00 100.59 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand CL, NA, NH2 enzyme
note 3D32 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • chemical synaptic transmissi...

  • Primary referenceLigand Binding Mode of GABA(A) Receptor-Associated Protein., Weiergraber OH, Stangler T, Thielmann Y, Mohrluder J, Wiesehan K, Willbold D, J Mol Biol. 2008 Jul 7. PMID:18638487
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3d32.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (3d32.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 3D32
  • CSU: Contacts of Structural Units for 3D32
  • Likely Quarternary Molecular Structure file(s) for 3D32
  • Structure Factors (454 Kb)
  • Retrieve 3D32 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D32 from S2C, [Save to disk]
  • Re-refined 3d32 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D32 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D32
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3D32, from MSDmotif at EBI
  • Fold representative 3d32 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d32_C] [3d32_B] [3d32_A] [3d32] [3d32_D]
  • SWISS-PROT database: [O95166]
  • Belongs to the neurotransmitter receptor, cys loop, ligand-gated ion channel (lic) family according to TCDB.
  • Domain organization of [GBRAP_HUMAN] by SWISSPFAM
  • Other resources with information on 3D32
  • Community annotation for 3D32 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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