3D3K	Protein Binding	date	May 12, 2008
title	Crystal Structure Of Human Edc3p
authors	S.H.M.Ling
compound		source
Molecule: Enhancer Of Mrna-Decapping Protein 3 Chain: A, B, C, D Fragment: C-Terminal, Unp Residues 250-508 Synonym: Yjef Domain-Containing Protein 1, Lsm16 Homolog Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Edc3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex6p1
symmetry	Space Group: C 2 2 21	R_factor 0.228 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.377 169.204 163.609 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
Primary reference	Crystal structure of human Edc3 and its functional implications., Ling SH, Decker CJ, Walsh MA, She M, Parker R, Song H, Mol Cell Biol. 2008 Aug 4. PMID:18678652

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk] Biological Unit Coordinates (3d3k.pdb1.gz) 75 Kb Biological Unit Coordinates (3d3k.pdb2.gz) 75 Kb Biological Unit Coordinates (3d3k.pdb3.gz) 74 Kb CSU: Contacts of Structural Units for 3D3K Likely Quarternary Molecular Structure file(s) for 3D3K Structure Factors (1037 Kb) Retrieve 3D3K in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D3K from S2C, [Save to disk] Re-refined 3d3k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D3K in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D3K

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D3K, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d3k_B] [3d3k] [3d3k_D] [3d3k_C] [3d3k_A] SWISS-PROT database: [Q96F86] Domain organization of [EDC3_HUMAN] by SWISSPFAM

Other resources with information on 3D3K

Community annotation for 3D3K at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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