3D3O Transcription Regulator date May 12, 2008
title Crystal Structure Of The Effector Domain Of The Putative Transcriptional Regulator Iclr From Acinetobacter Sp. Adp1
authors Y.Kim, G.Shackelford, A.Joachimiak, Midwest Center For Structur Genomics (Mcsg)
compound source
Molecule: Putative Transcriptional Regulator, Icir Family
Chain: A, B
Fragment: Effector Domain: Residues 81-255
Engineered: Yes
 Organism_scientific: Acinetobacter Sp.
Organism_taxid: 62977
Strain: Adp1
Gene: Aciad1822
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.382 71.681 96.222 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.46 Å
ligand MSE, NH4, SO4 enzyme
note 3D3O is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3d3o.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (3d3o.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 3D3O
  • CSU: Contacts of Structural Units for 3D3O
  • Likely Quarternary Molecular Structure file(s) for 3D3O
  • Structure Factors (289 Kb)
  • Retrieve 3D3O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D3O from S2C, [Save to disk]
  • Re-refined 3d3o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3D3O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3D3O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D3O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d3o_A] [3d3o_B] [3d3o]
  • SWISS-PROT database: [Q6FBA6]
  • Domain organization of [Q6FBA6_ACIAD] by SWISSPFAM
    • Other resources with information on 3D3O
  • Community annotation for 3D3O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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