3D3W Oxidoreductase date May 12, 2008
title Structure Of L-Xylulose Reductase With Bound Coenzyme, Phosphate And Hydroxide.
authors H.T.Zhao, O.El-Kabbani
compound source
Molecule: L-Xylulose Reductase
Chain: A
Synonym: Xr, Dicarbonyll-Xylulose Reductase, Kidney Dicarbonyl Reductase, Kidcr, Carbonyl Reductase II, Sperm Surface Protein P34h;
Ec: 1.1.1.10
Engineered: Yes
Other_details: Cso At Position 138
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dcxr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset

Molecule: L-Xylulose Reductase
Chain: B
Synonym: Xr, Dicarbonyll-Xylulose Reductase, Kidney Dicarbonyl Reductase, Kidcr, Carbonyl Reductase II, Sperm Surface Protein P34h;
Ec: 1.1.1.10
Engineered: Yes
Other_details: Cyscso At Position 138

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dcxr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset
symmetry Space Group: P 21 21 2
R_factor 0.204 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.678 87.476 72.168 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand CSO, NAP, PO4 enzyme Oxidoreductase E.C.1.1.1.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure/function analysis of a critical disulfide bond in the active site of L: -xylulose reductase., Zhao HT, Endo S, Ishikura S, Chung R, Hogg PJ, Hara A, El-Kabbani O, Cell Mol Life Sci. 2009 Apr 2. PMID:19337691
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (3d3w.pdb1.gz) 173 Kb
  • Biological Unit Coordinates (3d3w.pdb2.gz) 88 Kb
  • Biological Unit Coordinates (3d3w.pdb3.gz) 89 Kb
  • Biological Unit Coordinates (3d3w.pdb4.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 3D3W
  • CSU: Contacts of Structural Units for 3D3W
  • Likely Quarternary Molecular Structure file(s) for 3D3W
  • Structure Factors (592 Kb)
  • Retrieve 3D3W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D3W from S2C, [Save to disk]
  • View 3D3W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D3W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3D3W, from MSDmotif at EBI
  • Fold representative 3d3w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d3w_A] [3d3w] [3d3w_B]
  • SWISS-PROT database: [Q7Z4W1]
  • Domain organization of [DCXR_HUMAN] by SWISSPFAM
  • Other resources with information on 3D3W
  • Community annotation for 3D3W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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