3D3W	Oxidoreductase	date	May 12, 2008
title	Structure Of L-Xylulose Reductase With Bound Coenzyme, Phosphate And Hydroxide.
authors	H.T.Zhao, O.El-Kabbani
compound		source
Molecule: L-Xylulose Reductase Chain: A Synonym: Xr, Dicarbonyll-Xylulose Reductase, Kidney Dicarbonyl Reductase, Kidcr, Carbonyl Reductase II, Sperm Surface Protein P34h; Ec: 1.1.1.10 Engineered: Yes Other_details: Cso At Position 138		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dcxr Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Prset
Molecule: L-Xylulose Reductase Chain: B Synonym: Xr, Dicarbonyll-Xylulose Reductase, Kidney Dicarbonyl Reductase, Kidcr, Carbonyl Reductase II, Sperm Surface Protein P34h; Ec: 1.1.1.10 Engineered: Yes Other_details: Cyscso At Position 138		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dcxr Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Prset
symmetry	Space Group: P 21 21 2	R_factor 0.204 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.678 87.476 72.168 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.87 Å
ligand	CSO, NAP, PO4	enzyme	Oxidoreductase E.C.1.1.1.10 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure/function analysis of a critical disulfide bond in the active site of L: -xylulose reductase., Zhao HT, Endo S, Ishikura S, Chung R, Hogg PJ, Hara A, El-Kabbani O, Cell Mol Life Sci. 2009 Apr 2. PMID:19337691

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (3d3w.pdb1.gz) 173 Kb Biological Unit Coordinates (3d3w.pdb2.gz) 88 Kb Biological Unit Coordinates (3d3w.pdb3.gz) 89 Kb Biological Unit Coordinates (3d3w.pdb4.gz) 86 Kb LPC: Ligand-Protein Contacts for 3D3W CSU: Contacts of Structural Units for 3D3W Likely Quarternary Molecular Structure file(s) for 3D3W Structure Factors (592 Kb) Retrieve 3D3W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D3W from S2C, [Save to disk]

View 3D3W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D3W

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3D3W, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d3w_A] [3d3w] [3d3w_B] SWISS-PROT database: [Q7Z4W1] Domain organization of [DCXR_HUMAN] by SWISSPFAM

Other resources with information on 3D3W

Community annotation for 3D3W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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