3D48 Hormone Hormone Receptor date May 14, 2008
title Crystal Structure Of A Prolactin Receptor Antagonist Bound To The Extracellular Domain Of The Prolactin Receptor
authors L.A.Svensson, J.Breinholt
compound source
Molecule: Prolactin
Chain: P
Fragment: Residues 12-199
Synonym: Prl
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32-A(+)

Molecule: Prolactin Receptor
Chain: R
Fragment: Extracellular Domain
Synonym: Prl-R
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prlr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet39-B(+)
symmetry Space Group: P 65
R_factor 0.218 R_Free 0.295
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.350 125.350 69.820 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.50 Å
ligand CO3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceCrystal structure of a prolactin receptor antagonist bound to the extracellular domain of the prolactin receptor., Svensson LA, Bondensgaard K, Norskov-Lauritsen L, Christensen L, Becker P, Andersen MD, Maltesen MJ, Rand KD, Breinholt J, J Biol Chem. 2008 May 8;. PMID:18467331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3d48.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 3D48
  • CSU: Contacts of Structural Units for 3D48
  • Likely Quarternary Molecular Structure file(s) for 3D48
  • Structure Factors (340 Kb)
  • Retrieve 3D48 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D48 from S2C, [Save to disk]
  • Re-refined 3d48 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D48 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D48
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3D48, from MSDmotif at EBI
  • Fold representative 3d48 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d48_P] [3d48_R] [3d48]
  • SWISS-PROT database: [P16471] [P01236]
  • Domain organization of [PRLR_HUMAN] [PRL_HUMAN] by SWISSPFAM
  • Domain found in 3D48: [FN3 ] by SMART
  • Other resources with information on 3D48
  • Community annotation for 3D48 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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