3D4S Membrane Protein date May 14, 2008
title Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
authors M.A.Hanson, V.Cherezov, C.B.Roth, M.T.Griffith, V.P.Jaakola, E.Y J.Velasquez, P.Kuhn, R.C.Stevens, Accelerated Technologies Cen Gene To 3d Structure (Atcg3d), Gpcr Network (Gpcr)
compound source
Molecule: Beta-2 Adrenergic Receptort4-Lysozyme Chimera
Chain: A
Synonym: Beta-2 Adrenoceptor, Beta-2 Adrenoreceptor Lysis Muramidase, Endolysin;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_taxid: 9606, 10665
Gene: Adrb2, Adrb2r, B2ar E
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.000 75.700 172.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CLR, OLC, TIM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA Specific Cholesterol Binding Site Is Established by the 2.8 A Structure of the Human beta(2)-Adrenergic Receptor., Hanson MA, Cherezov V, Griffith MT, Roth CB, Jaakola VP, Chien EY, Velasquez J, Kuhn P, Stevens RC, Structure. 2008 Jun;16(6):897-905. PMID:18547522
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (3d4s.pdb1.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 3D4S
  • CSU: Contacts of Structural Units for 3D4S
  • Likely Quarternary Molecular Structure file(s) for 3D4S
  • Structure Factors (101 Kb)
  • Retrieve 3D4S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D4S from S2C, [Save to disk]
  • Re-refined 3d4s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D4S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D4S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3D4S, from MSDmotif at EBI
  • Fold representative 3d4s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d4s_A] [3d4s]
  • SWISS-PROT database: [P07550] [P00720]
  • Belongs to the g-protein-coupled receptor (gpcr) family according to TCDB.
  • Domain organization of [ADRB2_HUMAN] [LYS_BPT4] by SWISSPFAM
  • Other resources with information on 3D4S
  • Community annotation for 3D4S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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