3D5O date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GOL, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, D, E, B, A
  • negative regulation of monoc...

    • Primary referenceStructural recognition and functional activation of FcgammaR by innate pentraxins., Lu J, Marnell LL, Marjon KD, Mold C, Du Clos TW, Sun PD, Nature. 2008 Nov 16. PMID:19011614
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (199 Kb) [Save to disk]
  • Biological Unit Coordinates (3d5o.pdb1.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 3D5O
  • CSU: Contacts of Structural Units for 3D5O
  • Likely Quarternary Molecular Structure file(s) for 3D5O
  • Structure Factors (659 Kb)
  • Retrieve 3D5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D5O from S2C, [Save to disk]
  • Re-refined 3d5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3D5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d5o] [3d5o_] [3d5o_A] [3d5o_B] [3d5o_C] [3d5o_D] [3d5o_E] [3d5o_F]
  • SWISS-PROT database: [P12318] [P02743]
  • Belongs to the pentraxin (pentraxin) family according to TCDB.
  • Domains found in 3D5O: [IG] [PTX ] by SMART

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