3D77	Pheromone Binding Protein	date	May 20, 2008
title	Crystal Structure Of A Pheromone Binding Protein Mutant D35n, From Apis Mellifera, Soaked At Ph 4.0
authors	M.E.Pesenti, S.Spinelli, V.Bezirard, L.Briand, J.C.Pernollet, M.Tegoni, C.Cambillau
compound		source
Molecule: Pheromone-Binding Protein Asp1 Chain: A Fragment: Unp Residues 26-144 Engineered: Yes Mutation: Yes		Organism_scientific: Apis Mellifera Organism_common: Honeybee Organism_taxid: 7460 Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_vector_type: Plasmid Expression_system_plasmid: Phil-D2
symmetry	Space Group: C 2 2 21	R_factor 0.161 R_Free 0.191
crystal cell	length a length b length c angle alpha angle beta angle gamma 79.215 83.999 47.540 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	EDO, NA, NBB	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Queen Bee Pheromone Binding Protein pH-Induced Domain Swapping Favors Pheromone Release., Pesenti ME, Spinelli S, Bezirard V, Briand L, Pernollet JC, Campanacci V, Tegoni M, Cambillau C, J Mol Biol. 2009 May 28. PMID:19481550

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (3d77.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 3D77 CSU: Contacts of Structural Units for 3D77 Likely Quarternary Molecular Structure file(s) for 3D77 Structure Factors (833 Kb) Retrieve 3D77 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3D77 from S2C, [Save to disk] Re-refined 3d77 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D77 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3D77

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3D77, from MSDmotif at EBI Fold representative 3d77 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d77] [3d77_A] SWISS-PROT database: [Q9U9J6] Domain organization of [Q9U9J6_APIME] by SWISSPFAM Domain found in 3D77: [PhBP ] by SMART

Other resources with information on 3D77

Community annotation for 3D77 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014 Bioinformatics Unit Weizmann Institute of Science

---