3D7C Transcription date May 21, 2008
title Crystal Structure Of The Bromodomain Of Human Gcn5, The Gene Control Of Amino-Acid Synthesis Protein 5-Like 2
authors P.Filippakopoulos, J.Eswaran, S.Picaud, O.Fedorov, J.Murray, F.Vo C.H.Arrowsmith, A.M.Edwards, C.Bountra, S.Knapp, Structural Gen Consortium (Sgc)
compound source
Molecule: General Control Of Amino Acid Synthesis Protein 5
Chain: A, B
Fragment: Bromo Domain: Residues 729-837
Synonym: Histone Acetyltransferase Gcn5, Hsgcn5, Staf97
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Gcn5l2, Gcn5, Hgcn5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.428 72.862 75.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.06 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceHistone recognition and large-scale structural analysis of the human bromodomain family., Filippakopoulos P, Picaud S, Mangos M, Keates T, Lambert JP, Barsyte-Lovejoy D, Felletar I, Volkmer R, Muller S, Pawson T, Gingras AC, Arrowsmith CH, Knapp S, Cell. 2012 Mar 30;149(1):214-31. PMID:22464331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3d7c.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (3d7c.pdb2.gz) 19 Kb
  • CSU: Contacts of Structural Units for 3D7C
  • Likely Quarternary Molecular Structure file(s) for 3D7C
  • Structure Factors (236 Kb)
  • Retrieve 3D7C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D7C from S2C, [Save to disk]
  • Re-refined 3d7c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D7C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D7C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3D7C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d7c_A] [3d7c_B] [3d7c]
  • SWISS-PROT database: [Q92830]
  • Domain organization of [KAT2A_HUMAN] by SWISSPFAM
  • Domain found in 3D7C: [BROMO ] by SMART
  • Other resources with information on 3D7C
  • Community annotation for 3D7C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science