OCA Atlas for 3D87

3D87

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

K, MAN, PO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, C		positive regulation of inter... positive regulation of inter...
D, B		positive regulation of inter... positive regulation of inter...

Primary reference

Crystal Structures of the Pro-Inflammatory Cytokine Interleukin-23 and Its Complex with a High-Affinity Neutralizing Antibody., Beyer BM, Ingram R, Ramanathan L, Reichert P, Le HV, Madison V, Orth P, J Mol Biol. 2008 Aug 7. PMID:18708069

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]

Biological Unit Coordinates (3d87.pdb1.gz) 141 Kb

Biological Unit Coordinates (3d87.pdb2.gz) 72 Kb

Biological Unit Coordinates (3d87.pdb3.gz) 72 Kb

LPC: Ligand-Protein Contacts for 3D87

CSU: Contacts of Structural Units for 3D87

Likely Quarternary Molecular Structure file(s) for 3D87

Structure Factors (1222 Kb)

Retrieve 3D87 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3D87 from S2C, [Save to disk]

Re-refined 3d87 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3D87 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3d87] [3d87_A] [3d87_B] [3d87_C] [3d87_D]

SWISS-PROT database: [P29460] [Q9NPF7]

Domains found in 3D87: [IGc2] [IL6 ] by SMART

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