3D9H Structural Protein, Protein Binding date May 27, 2008
title Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9 Ankyrin Repeat Protein
authors X.Fei, X.Gu, S.Fan, C.Zhang, C.Ji
compound source
Molecule: Cdna Flj77766, Highly Similar To Homo Sapiens Ank Repeat And Socs Box-Containing 9 (Asb9), Transcript Variant
Chain: A
Synonym: Ankyrin Repeat And Socs Box-Containing 9, Isoform Hasb9-2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hasb9-2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rossetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 43 3 2
R_factor 0.194 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.254 129.254 129.254 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3d9h.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 3D9H
  • Likely Quarternary Molecular Structure file(s) for 3D9H
  • Structure Factors (475 Kb)
  • Retrieve 3D9H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3D9H from S2C, [Save to disk]
  • Re-refined 3d9h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3D9H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3D9H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3D9H, from MSDmotif at EBI
  • Fold representative 3d9h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3d9h] [3d9h_A]
  • SWISS-PROT database: [Q96DX5]
  • Domain organization of [ASB9_HUMAN] by SWISSPFAM
  • Domain found in 3D9H: [ANK ] by SMART
  • Other resources with information on 3D9H
  • Community annotation for 3D9H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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