3DAD Signaling Protein date May 29, 2008
title Crystal Structure Of The N-Terminal Regulatory Domains Of Th Fhod1
authors A.Schulte, B.Stolp, A.Schonichen, O.Pylypenko, A.Rak, O.T.Fackler
compound source
Molecule: Fh1fh2 Domain-Containing Protein 1
Chain: A, B
Fragment: Gbd And Fh3 Domain
Synonym: Formin Homolog Overexpressed In Spleen 1, Fhos, Fo Homology 2 Domain-Containing Protein 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fhod1, Fhos, Fhos1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-Hta
symmetry Space Group: P 1
R_factor 0.219 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
35.444 73.931 78.674 78.24 86.17 89.67
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe human formin FHOD1 contains a bipartite structure of FH3 and GTPase-binding domains required for activation., Schulte A, Stolp B, Schonichen A, Pylypenko O, Rak A, Fackler OT, Geyer M, Structure. 2008 Sep 10;16(9):1313-23. PMID:18786395
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (3dad.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (3dad.pdb2.gz) 50 Kb
  • CSU: Contacts of Structural Units for 3DAD
  • Likely Quarternary Molecular Structure file(s) for 3DAD
  • Structure Factors (242 Kb)
  • Retrieve 3DAD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DAD from S2C, [Save to disk]
  • Re-refined 3dad structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DAD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DAD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DAD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dad_B] [3dad] [3dad_A]
  • SWISS-PROT database: [Q9Y613]
  • Domain organization of [FHOD1_HUMAN] by SWISSPFAM
  • Other resources with information on 3DAD
  • Community annotation for 3DAD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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