3DAG		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CMO, FE2, FEG	enzyme
note	3DAG (Molecule of the Month:pdb111)
Gene Ontology	Chain Function Process Component A
Primary reference	The crystal structure of [Fe]-hydrogenase reveals the geometry of the active site., Shima S, Pilak O, Vogt S, Schick M, Stagni MS, Meyer-Klaucke W, Warkentin E, Thauer RK, Ermler U, Science. 2008 Jul 25;321(5888):572-5. PMID:18653896

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (3dag.pdb1.gz) 113 Kb LPC: Ligand-Protein Contacts for 3DAG CSU: Contacts of Structural Units for 3DAG Likely Quarternary Molecular Structure file(s) for 3DAG Structure Factors (530 Kb) Retrieve 3DAG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3DAG from S2C, [Save to disk] Re-refined 3dag structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DAG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dag] [3dag_A] SWISS-PROT database: [Q58194]

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