3DAI Signaling Protein date May 29, 2008
title Crystal Structure Of The Bromodomain Of The Human Atad2
authors P.Filippakopoulos, T.Keates, S.Picaud, O.Fedorov, A.K.Roos, F.Von C.H.Arrowsmith, A.M.Edwards, C.Bountra, S.Knapp, Structural Gen Consortium (Sgc)
compound source
Molecule: Atpase Family Aaa Domain-Containing Protein 2
Chain: A
Fragment: Residues 981-1108
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Atad2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 65 2 2
R_factor 0.201 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.616 79.616 137.550 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand CL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHistone recognition and large-scale structural analysis of the human bromodomain family., Filippakopoulos P, Picaud S, Mangos M, Keates T, Lambert JP, Barsyte-Lovejoy D, Felletar I, Volkmer R, Muller S, Pawson T, Gingras AC, Arrowsmith CH, Knapp S, Cell. 2012 Mar 30;149(1):214-31. PMID:22464331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (3dai.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 3DAI
  • CSU: Contacts of Structural Units for 3DAI
  • Likely Quarternary Molecular Structure file(s) for 3DAI
  • Structure Factors (903 Kb)
  • Retrieve 3DAI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DAI from S2C, [Save to disk]
  • Re-refined 3dai structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DAI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DAI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DAI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dai] [3dai_A]
  • SWISS-PROT database: [Q6PL18]
  • Domain organization of [ATAD2_HUMAN] by SWISSPFAM
  • Domain found in 3DAI: [BROMO ] by SMART
  • Other resources with information on 3DAI
  • Community annotation for 3DAI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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