3DAK Transferase date May 29, 2008
title Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
authors S.Lee, M.H.Cobb, E.J.Goldsmith
compound source
Molecule: Serinethreonine-Protein Kinase Osr1
Chain: A, B, C, D
Fragment: Protein Kinase Domain, Unp Residues 6-295
Synonym: Oxidative Stress-Responsive 1 Protein
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: 1-295
Gene: Oxsr1, Kiaa1101, Osr1
Expression_system: Escherichia Coli
Expression_system_strain: Rosetta2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis-Parallel Vector
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.208 104.484 162.903 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand ANP, MG enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of domain-swapped STE20 OSR1 kinase domain., Lee SJ, Cobb MH, Goldsmith EJ, Protein Sci. 2009 Feb;18(2):304-13. PMID:19177573
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (375 Kb) [Save to disk]
  • Biological Unit Coordinates (3dak.pdb1.gz) 369 Kb
  • Biological Unit Coordinates (3dak.pdb2.gz) 186 Kb
  • Biological Unit Coordinates (3dak.pdb3.gz) 186 Kb
  • LPC: Ligand-Protein Contacts for 3DAK
  • CSU: Contacts of Structural Units for 3DAK
  • Likely Quarternary Molecular Structure file(s) for 3DAK
  • Structure Factors (795 Kb)
  • Retrieve 3DAK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DAK from S2C, [Save to disk]
  • Re-refined 3dak structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DAK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DAK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DAK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dak_D] [3dak_A] [3dak] [3dak_C] [3dak_B]
  • SWISS-PROT database: [O95747]
  • Domain organization of [OXSR1_HUMAN] by SWISSPFAM
  • Domain found in 3DAK: [S_TKc ] by SMART
  • Other resources with information on 3DAK
  • Community annotation for 3DAK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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