3DAL Transferase date May 29, 2008
title Methyltransferase Domain Of Human Pr Domain-Containing Prote
authors M.F.Amaya, H.Zeng, T.Antoshenko, A.Dong, P.Loppnau, C.Bountra, J.W C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, A.N.Plotnikov, Structural Genomics Consortium (Sgc)
compound source
Molecule: Pr Domain Zinc Finger Protein 1
Chain: A, B
Synonym: Pr Domain-Containing Protein 1, Beta-Interferon Ge Positive Regulatory Domain I-Binding Factor, Blimp-1, Posit Regulatory Domain I-Binding Factor 1, Prdi-Binding Factor 1 Bf1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prdm1, Blimp1
Expression_system: Escherichia Coli
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.834 64.960 112.663 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
note 3DAL is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (3dal.pdb1.gz) 63 Kb
  • CSU: Contacts of Structural Units for 3DAL
  • Likely Quarternary Molecular Structure file(s) for 3DAL
  • Structure Factors (1039 Kb)
  • Retrieve 3DAL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DAL from S2C, [Save to disk]
  • Re-refined 3dal structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DAL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3DAL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3DAL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dal] [3dal_B] [3dal_A]
  • SWISS-PROT database: [O75626]
  • Domain organization of [PRDM1_HUMAN] by SWISSPFAM
  • Domain found in 3DAL: [SET ] by SMART
    • Other resources with information on 3DAL
  • Community annotation for 3DAL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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