OCA Atlas for 3DBJ

3DBJ

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CYC, MEN

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, E, C, G
H, B, D, F

Primary reference

Allophycocyanin trimer stability and functionality are primarily due to polar enhanced hydrophobicity of the phycocyanobilin binding pocket., McGregor A, Klartag M, David L, Adir N, J Mol Biol. 2008 Dec 12;384(2):406-21. Epub 2008 Sep 16. PMID:18823993

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]

Biological Unit Coordinates (3dbj.pdb1.gz) 156 Kb

Biological Unit Coordinates (3dbj.pdb2.gz) 158 Kb

Biological Unit Coordinates (3dbj.pdb3.gz) 157 Kb

Biological Unit Coordinates (3dbj.pdb4.gz) 157 Kb

LPC: Ligand-Protein Contacts for 3DBJ

CSU: Contacts of Structural Units for 3DBJ

Likely Quarternary Molecular Structure file(s) for 3DBJ

Structure Factors (242 Kb)

Retrieve 3DBJ in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3DBJ from S2C, [Save to disk]

Re-refined 3dbj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3DBJ in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3dbj] [3dbj_A] [3dbj_B] [3dbj_C] [3dbj_D] [3dbj_E] [3dbj_F] [3dbj_G] [3dbj_H]

SWISS-PROT database: [B3VNK2] [B3VNK3] [P50030] [P50031]

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