3DBZ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, MPD enzyme
Primary referenceInteraction of recombinant surfactant protein D with lipopolysaccharide: conformation and orientation of bound protein by IRRAS and simulations., Wang L, Brauner JW, Mao G, Crouch E, Seaton B, Head J, Smith K, Flach CR, Mendelsohn R, Biochemistry. 2008 Aug 5;47(31):8103-13. Epub 2008 Jul 12. PMID:18620419
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (3dbz.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 3DBZ
  • CSU: Contacts of Structural Units for 3DBZ
  • Likely Quarternary Molecular Structure file(s) for 3DBZ
  • Structure Factors (741 Kb)
  • Retrieve 3DBZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DBZ from S2C, [Save to disk]
  • Re-refined 3dbz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3DBZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dbz] [3dbz_A] [3dbz_B] [3dbz_C]
  • SWISS-PROT database: [P35247]
  • Domain found in 3DBZ: [CLECT ] by SMART

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