3DC1 Transferase date Jun 03, 2008
title Crystal Structure Of Kynurenine Aminotransferase II Complex Alpha-Ketoglutarate
authors Q.Han, T.Cai, D.A.Tagle, H.Robinson, J.Li
compound source
Molecule: Kynureninealpha-Aminoadipate Aminotransferase Mitochondrial;
Chain: A, B, C, D
Synonym: Kataadat, Kynurenine--Oxoglutarate Transaminase I Kynurenine Aminotransferase II, Kynurenine--Oxoglutarate Aminotransferase II, 2-Aminoadipate Transaminase, 2-Aminoad Aminotransferase, Alpha-Aminoadipate Aminotransferase, Aada
Ec: 2.6.1.7, 2.6.1.39
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aadat, Kat2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb
symmetry Space Group: P 1
R_factor 0.215 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.930 72.090 109.079 89.97 100.65 93.88
method X-Ray Diffractionresolution 2.50 Å
ligand AKG, GOL, LLP enzyme Transferase E.C.2.6.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • kynurenine-oxoglutarate tran...


  • Primary referenceSubstrate specificity and structure of human aminoadipate aminotransferase/kynurenine aminotransferase II., Han Q, Cai T, Tagle DA, Robinson H, Li J, Biosci Rep. 2008 Jul 14. PMID:18620547
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (288 Kb) [Save to disk]
  • Biological Unit Coordinates (3dc1.pdb1.gz) 143 Kb
  • Biological Unit Coordinates (3dc1.pdb2.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 3DC1
  • CSU: Contacts of Structural Units for 3DC1
  • Likely Quarternary Molecular Structure file(s) for 3DC1
  • Structure Factors (936 Kb)
  • Retrieve 3DC1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3DC1 from S2C, [Save to disk]
  • Re-refined 3dc1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3DC1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3DC1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3DC1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m3dc1, region C:5-114 [Jmol] [rasmolscript] [script source]
  • Fold representative 3dc1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3dc1] [3dc1_C] [3dc1_D] [3dc1_A] [3dc1_B]
  • SWISS-PROT database: [Q8N5Z0]
  • Domain organization of [AADAT_HUMAN] by SWISSPFAM
  • Other resources with information on 3DC1
  • Community annotation for 3DC1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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